- Characterization of the intestinal microbiome in patients with diarrheal disease and otherwise healthy family members.
See: Singh et. al., Microbiome 2015; Singh and Manning, Annals of Epidemiol 2016.
- Characterization of the intestinal microbiome in ruminants (deer and cattle) with and without Shiga toxin-producing E. coli.
- Examining the phageome and identifying protective phage populations capable of killing pathogens.